Genetic diversity of Calpain 1 gene in Bolivian Creole, Nellore and Brahman bovine breeds in Bolivia
Keywords:
Criollo Boliviano, Brahman, Nelore, terneza, calpaína, SNPs.
Abstract
In Bolivia, beef production is mainly based on two genotypes, Bos taurus (Creole cattle) and B. indicus (zebu), being weight gain the main selection criteria used by farmers. However, meat quality and especially tenderness must be incorporated in the selection process. Meat tenderness is partly determined by the calpain (CAPN1)/calpastatin (CAST) protein system. Thus, the objective of the present work was to determine and compare the genetic variability of the CAPN1 gene in Creole (CreBo), Brahman (BraBo) and Nellore (NelBo) breeds in Bolivia. DNA was extracted from blood samples from 147 CreBo, 59 BraBo and 93 NelBo, and three polymorphisms were genotyped using ARMS-PCR (CAPN1-316 and CAPN1-4751) and PCR-RFLP (CAPN1-530). Furthermore, CAPN1-316 and CAPN1-4751 were analyzed with Axiom™ Bos 1 Genotyping Array r3. Allele frequencies associated with higher tenderness in CreBo, BraBo and NelBo were 0.22, 0 and 0.09 (CAPN1-316 C), 0.76, 0.16 and 0.08 (CAPN1-4751 C), and 0.77, 0.92 and 0.94 (CAPN1-530 G). Linkage disequilibrium (LD) analysis revealed the presence of two LD blocks. Our results evidence that CreBo has a higher frequency of alleles associated with higher meat tenderness than the analyzed zebu breeds. These markers could be used in breeding programs to improve Bolivian cattle herd meat quality either by selection within Creole breeds or crosses with zebu cattle.
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References
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Curi, R., L. Chardulo, J. Giusti, A. Silveira, C. Martins, H. de Oliveira. 2010. Assessment of GH1, CAPN1 and CAST polymorphisms as markers of carcass and meat traits in Bos indicus and Bos taurus-Bos indicus cross beef cattle. Meat Science, 86: 915–920. https://www.sciencedirect.com/science/article/pii/S0309174010002950
de Alba, J. 2011. El libro de los bovinos criollos en América. Colegio de Postgraduados, Mexico. ISBN 9786077699118
Dekkers, J., F. Hospital. 2002. The Use of Molecular Genetics in the Improvement of Agricultural Populations. Nature Reviews Genetics, 3: 22–32. https://www.nature.com/articles/nrg701
Garriz, C., M. Gallinger, M. Zamorano, C. Mezzadra. 1993. Calidad de carne en novillos de raza criolla argentina y Aberdeen Angus puros y cruzas Criollos x Angus y Nelore x Angus. En: Ganado Bovino Criollo Tomo 3. Orientación Gráfica Editora. 178–197.
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Juszczuk-Kubiak, E., T. Sakowski, K. Flisikowski, K. Wicinska, J. Oprzadek, S. Rosochacki. 2004. Bovine mu-calpain (CAPN1) gene: new SNP within intron 14. Journal of Applied Genetics, 5: 457–460. http://jag.igr.poznan.pl/2004-Volume-45/4/abstracts/235.html
Kavan, D., P. Man. 2011. MSTools—Web based application for visualization and presentation of HXMS data. International Journal of Mass Spectrometry, 302: 53–58. https://www.sciencedirect.com/science/article/pii/S1387380610002666
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Lee, S.H., S.C. Kim, H.H. Chai, S.H. Cho, H.C. Kim, D. Lim, B.H. Choi, C.G. Dang, A. Sharma, C. Gondro, B.S. Yang. 2014. Mutations in calpastatin and μ-calpain are associated with meat tenderness, flavor and juiciness in Hanwoo (Korean cattle): Molecular modeling of the effects of substitutions in the calpastatin/μ-calpain complex. Meat Science, 96: 1501–1508. https://www.sciencedirect.com/science/article/pii/S030917401300644X
Lirón, J.P., C. Bravi, P. Mirol, P. Peral-Garcia, G. Giovambattista. 2006a. African matrilineages in American Creole cattle: evidence of two independent continental sources. Animal Genetics, 37: 379–382. https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2052.2006.01452.x
Lirón, J.P., P. Peral-García, G. Giovambattista. 2006b. Genetic Characterization of Argentine and Bolivian Creole Cattle Breeds Assessed through Microsatellites. Journal of Heredity, 97: 331–339. https://academic.oup.com/jhered/article/97/4/331/2187667
López-Rojas, L., L. Patiño-Cadavid, A. López-Herrera, J. Echeverri-Zuluaga. 2017. Genotyping of SNPs associated with meat tenderness: comparison of two PCR-based methods. Genetics and Molecular Research, 16 (2). https://doi.org/10.4238/gmr16029635
MacNeil, M., M. Grosz. 2002. Genome-wide scans for QTL affecting carcass traits in Hereford x composite double backcross populations. Journal of Animal Science, 80: 2316–2324. https://academic.oup.com/jas/article-abstract/80/9/2316/4789691
Mazzucco, J., L. Melucci, E. Villarreal, C. Mezzadra, L. Soria, P. Corva, M.M. Motter, A. Schor, M.C. Miquel. 2010. Effect of ageing and μ-calpain markers on meat quality from Brangus steers finished on pasture. Meat Science, 86: 878–882. https://www.sciencedirect.com/science/article/pii/S0309174010002949
Mezzadra, C., L.M. Melucci. 2005. Experiencias en conservación, evaluación y utilización del bovino criollo argentino. Agrociencia, 9: 453-457. https://www.produccion-animal.com.ar/informacion_tecnica/raza_criolla/91-experiencias.pdf
Ng, P.C., S. Henikoff. 2006. Predicting the Effects of Amino Acid Substitutions on Protein Function. Annual Reviews of Genomics and Human Genetics, 7: 61–80. https://www.annualreviews.org/doi/abs/10.1146/annurev.genom.7.080505.115630
Ouali, A., A. Talmant. 1990. Calpains and calpastatin distribution in bovine, porcine and ovine skeletal muscles. Meat Science, 28: 331–348. https://www.sciencedirect.com/science/article/pii/030917409090047A
Page, B., E. Casas, M. Heaton, N. Cullen, D. Hyndman, C. Morris, A.M. Crawford, T.L. Wheeler, M. Koohmaraie, J.W. Keele, T.P. Smith. 2002. Evaluation of single-nucleotide polymorphisms in CAPN1 for association with meat tenderness in cattle. Journal of Animal Science, 80: 3077–3085. https://academic.oup.com/jas/article-abstract/80/12/3077/4789349
Page, B., E. Casas, R.L. Quaas, R.M. Thallman, T.L. Wheeler, S.D. Shackelford, M. Koohmaraie, S.N. White, G.L. Bennett, J.W. Keele, M.E. Dikeman. 2004. Association of markers in the bovine CAPN1 gene with meat tenderness in large crossbred populations that sample influential industry sires. Journal of Animal Science, 82: 3474–3481. https://academic.oup.com/jas/article-abstract/82/12/3474/4790167
Pinto, L., J. Ferraz, F. Meirelles, J. Eler, F. Rezende, M. Carvalho, H.B. Almeida, R.C.G. Silva. 2010. Association of SNPs on CAPN1 and CAST genes with tenderness in Nellore cattle. Genetics and Molecular Research, 9: 1431–1442. https://doi.org/10.4238/vol9-3gmr881
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Published
2022-03-16
How to Cite
Pereira, Juan A.C., Agustin H. Falomir-Lockhart, Ariel J. Loza, Egle E. Villegas-Castagnasso, Pedro Rojas, Monica H. Carino, Rodrigo Hoyos, Andres Rogberg-Muñoz, and Guillermo Giovambattista. 2022. “Genetic Diversity of Calpain 1 Gene in Bolivian Creole, Nellore and Brahman Bovine Breeds in Bolivia”. Archivos Latinoamericanos De Producción Animal 30 (2), 121-32. https://doi.org/10.53588/alpa.300206.
Section
Original paper
Copyright (c) 2022 Juan A.C. Pereira, Agustin H. Falomir-Lockhart, Ariel J. Loza, Egle E. Villegas-Castagnasso, Pedro Rojas, Monica H. Carino, Rodrigo Hoyos, Andres Rogberg-Muñoz, Guillermo Giovambattista
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